Fold assessment for comparative protein structure modeling
نویسندگان
چکیده
منابع مشابه
Comparative modeling for protein structure prediction.
With the progression of structural genomics projects, comparative modeling remains an increasingly important method of choice. It helps to bridge the gap between the available sequence and structure information by providing reliable and accurate protein models. Comparative modeling based on more than 30% sequence identity is now approaching its natural template-based limits and further improvem...
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For the fifth round of Critical Assessment of Techniques for Protein Structure Prediction (CASP5) all comparative modeling (CM) and fold recognition (FR) target proteins were modeled using a combination of consensus alignment strategy and 3D assessment. A large number and broad variety of prediction targets, with sequence identity between each modeled domain and the related known structure, ran...
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The function of a protein is generally determined by its three-dimensional (3D) structure. Thus, it would be useful to know 3D structure of the thousands of protein sequences that are emerging from the many genome projects. This is the aim of structural genomics. The aim will be achieved by a focused, large-scale determination of protein structures by X-ray crystallography and nuclear magnetic ...
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Multiple Mapping Method with Multiple Templates (M4T) (http://www.fiserlab.org/servers/m4t) is a fully automated comparative protein structure modeling server. The novelty of M4T resides in two of its major modules, Multiple Templates (MT) and Multiple Mapping Method (MMM). The MT module of M4T selects and optimally combines the sequences of multiple template structures through an iterative clu...
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Genome-wide protein structure prediction and structure-based function annotation have been a long-term goal in molecular biology but not yet become possible due to difficulties in modeling distant-homology targets. We developed a hybrid pipeline combining ab initio folding and template-based modeling for genome-wide structure prediction applied to the Escherichia coli genome. The pipeline was t...
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ژورنال
عنوان ژورنال: Protein Science
سال: 2007
ISSN: 0961-8368,1469-896X
DOI: 10.1110/ps.072895107